Computational Biology

Biomolecular Modeling:
Anant Godbole: Mathematics and Statistics
Teresa Haynes:  Mathematics and Statistics
David Johnson: Biochemistry and Molecular Biology
Debra Knisley: Mathematics and Statistics
Jeff Knisley: Mathematics and Statistics
Dhirendra Kumar: Biological Sciences
Celia McIntosh: Biological Sciences
Chris Wallace: Information and Computer Science
Yue Zou: Biochemistry and Molecular Biology

Complex Networks and Systems Biology
Teresa Haynes:  Mathematics and Statistics
David Johnson: Biochemistry and Molecular Biology
Karl Joplin: Biological Sciences
Michele Joyner:  Mathematics and Statistics
Debra Knisley:  Mathematics and Statistics
Jeff Knisley:  Mathematics and Statistics
Dhirendra Kumar: Biological Sciences
Celia McIntosh: Biological Sciences
Edith Seier:  Mathematics and Statistics

Computational Neuroscience
Lee Glenn: Nursing
Jeff Knisley:  Mathematics and Statistics
Eric Sellers: Psychology


Recent Publications: 
2012-2013

Teresa Haynes

Book Chapter: Domination in graphs,Handbook of Graph Theory, Second Edition, Chapter 9,eds. Gross and Yellen (2012) (with Michael Henning).

Domination edge lift critical trees, Quaestiones Mathematicae 35 (2012) 57-68 (with Desormeaux and Henning).

On a conjecture of Murty and Simon on diameter two critical graphs II, Discrete Math. 312 (2012) 315-323 (with Henning, van der Merwe,
and Yeo).

Erratum to "Total domination supercritical graphs with respect to relative complements" [Discrete Math. 258 (2002) 361–371]. Discrete
Math. 312 (2012) 1076 (with Alimadadi, Eslahchi, Henning, Jafari Rad,and van der Merwe).

A characterization of diameter-2 critical graphs with no antihole of length four, Central European Journal of Mathematics 10 (2012)
1125-1132 (with Henning).

A characterization of diameter-2-critical graphs whose complements are diamond-free, Discrete Appl. Math.160 (2012) 1979-1985
(with Henning).

Liar's domination in ladders,Cong.Numer. 212 (2012) 45-56 (with Slater and Sterling).

Cost effective domination in graphs, Cong. Numer. 211 (2012) 197-209 (with Hedetniemi, Hedetniemi, McCoy, and Vasylieva).

Edge lifting and total domination in graphs, J. Combin Optim. 25 (2013) 47-59 (with Desormeaux and Henning).

Relating the annihilation number and the total domination number of a tree, Discrete Appl. Math.161 (2013)  349-354 (with Desormeaux
and Henning).

Global Domination Stable Trees, J. Combin. Math. Combin. Comput. 85 (2013) 237–252.

Independent domination in complementary prisms, Utilitas Math.91 (2013) (with Gongora and Jum).

Double domination in complementary prisms, Utilitas Math. 91 (2013)(with Desormeaux and Vaughan). 

David Johnson

Sanjay K. Singh, Avinash Thirumalai, David J. Hammond, Jr., Michael K. Pangburn, Vinod K. Mishra, David A. Johnson, Antonio E. Rusiñol, and Alok Agrawal Exposing a hidden functional site of C-reactive protein by site-directed mutagenesis J.Biol.Chem. 287, 3550–3558, 2012.

Eliot T. Smith and David A. Johnson, Human Enteropeptidase Light Chain: Bioengineering of Recombinants and Kinetic Investigations of Structure and Function, Protein Science 22, 577-585, 2013.

  

Michele Joyner

Michele Joyner, Chelsea Ross (undergraduate), and E. Seier, Distance to the border in spatial point patterns, Spatial Statistics, Vol. 6, pp. 24-40, DOI: 10.1016/j.spasta.2013.05.002, July, 2013; in print:November, 2013.

Michele L. Joyner, Cammey C. Manning, and Brandi N. Canter, Modeling the Effects of Introducing a New Antibiotic in a Hospital Setting: A Case Study, Mathematical Biosciences and Engineering, Vol. 9, No. 3, pp. 601-615, July, 2012.

HT Banks, S. Hu, M. Joyner, A. Broido, B. Canter, K. Gayvert, and K. Link, A Comparison of Computational Efficiencies of Stochastic Algorithms in Terms of Two Infection Models, CRSC Technical Report CRSC-TR11-13, Mathematical Biosciences and Engineering, Vol. 9, No. 3, pp. 487-526, July 2012.

Modeling the Differences in the Development of a New Antibiotic Class versus the Development of a Next Generation Antibiotic on the Total Resistance in a Hospital Setting, Journal of Biological Systems, Vol. 20, No. 1, pp. 109-132, March 2012.

HT Banks, Anna Broido, Brandi Canter, Kaitlyn Gayvert, Shuhua Hu, Michele L. Joyner, and Kathryn Link, Simulation Algorithms for Continuous Time Markov Chain Models, CRSC Technical Report CRSC-TR11-17, Simulation and Modeling Related to Computational Science and Robotics Technology: Proceedings of SiMCRT 2011, editors Fumio Kojima, Futoshi Kobayashi, and Hiroyuki Nakamoto, IOS Press, p 3-18, 2012.

Debra Knisley

Graph-theoretic models of mutations in the nucleotide binding domain 1 of the cystic fibrosis transmembrane conductance regulator, Knisley D, Knisley J and Herron C, Comp Biol J, 2013, Article ID 138969 (open access)

Network Properties of nested (t,r)-regular graphs, Knisley D. Brooks J and Knisley J, Journal of Combinatorial Mathematics and Computational Computing, (to appear).

Classifying multigraph models of secondary RNA structure using graph-theoretic descriptors, Knisley D, Knisley J, Rockney A and Ross C, ISRN Bioinformatics (2012) http://www.isrn.com/journals/bioinformatics/aip/157135/

Jeff Knisley

Graph-theoretic models of mutations in the nucleotide binding domain 1 of the cystic fibrosis transmembrane conductance regulator, Comp Biol J, Knisley D, Knisley J and Herron C, 2013, Article ID 138969 (open access)

Network Properties of nested (t,r)-regular graphs, Knisley D. Brooks J and Knisley J, Journal of Combinatorial Mathematics and Computational Computing, (to appear).

Classifying multigraph models of secondary RNA structure using graph-theoretic descriptors, Knisley D, Knisley J, Rockney A and Ross C, ISRN Bioinformatics (2012) http://www.isrn.com/journals/bioinformatics/aip/157135/

Eric Sellers

Throckmorton, C.S., Colwell K., Ryan D.B., Sellers E.W., Collins, L.M. (2013). A paradigm-independent method of dynamically controlling data collection in decision-based brain-computer interfaces. IEEE Transactions on Neural System and Rehabilitation Engineering, 21(3) 508-517.

Jin, J., Sellers, E.W., Zhang, Y., Daly, I., Wang, X., Cichocki, A. (2012). Whether generic model works for rapid ERP-based BCI calibration. J Neurosci Methods. 212(1): 94-99. PMID 230321

Townsend, G., Shanahan, J., Ryan, D.B., Sellers, E.W. (2012). A general P300 brain-computer interface presentation paradigm based on performance guided constraints. Neurosci Lett. PMID 22960261

Sellers, E.W. (2012). New horizons in brain-computer interface. Clinical Neurophysiology, 124(1):2-4. PMID 22902247

Fazel-Reazi, R., Allison, B.Z., Guger, C., Sellers, E.W., Kleih, S.C., Kübler, A. (2012). P300 brain computer interface: Current challenges and emerging trends. Front Neuroeng. 5:14. PMID: 22822397

Jin, J., Sellers, E.W., Wang W. (2012). Targeting an Efficient Target-to-Target Interval for P300 Speller Brain-Computer Interfaces. Medical and Biological Engineering and Computing. PMID 22350331

Vaughan, T.M., Sellers, E.W., Wolpaw, J.R. (2012). Clinical Evaluation of BCIs. In J.R. Wolpaw and E.W. Winter Wolpaw (Eds.). Oxford University Press Inc. NY. (pp. 325-336).

Sellers, E.W., Arbel, Y., Donchin, E. (2012). P300 event-related potentials and related activity in the EEG. In J.R. Wolpaw and E.W. Winter Wolpaw (Eds.). Oxford University Press Inc. NY. (pp. 215-226).