run_medfilter = 1
run_detect_radhit = 1
have_uncertainties = 1
compute_uncertainties_internally = 0 
run_fiducial_image_frame = 1
run_mosaic_interp = 1
run_detect_outlier = 1
run_mosaic_proj = 1
run_mosaic_covg = 1
run_mosaic_dual_outlier = 1
run_level = 1
run_mosaic_outlier = 1
run_mosaic_rmask = 1
run_mosaic_reinterp = 1
run_mosaic_coadder = 1
run_mosaic_combiner = 1
keep_coadded_tiles = 1
mask_bright = 1

create_rmask_mosaic = 1 
NICE = 1
verbose = 1

USE_OUTLIER_FOR_RMASK = 1
USE_DUAL_OUTLIER_FOR_RMASK = 1
USE_REFINED_POINTING = 0

MOSAIC_PIXEL_RATIO_X = 1
MOSAIC_PIXEL_RATIO_Y = 1
#MOSAIC_PIXEL_SIZE_X = -0.000339
#MOSAIC_PIXEL_SIZE_Y = 0.000339

#DMASK_DIR = Dmask
#INTERP_DIR = Interp_drizzle1
#COADDER_DIR = Coadd_drizzle1
#COMBINER_DIR = Combine_drizzle1
#REINTERP_DIR = REINT
OUTPUT_DIR = mosaic3

IMAGE_STACK_FILE_NAME = overlap3/Overlap_Corr/correct_image_stack_all3.txt
PMASK_FILE_NAME = ../cal/chan3_mar04_pmask.fits
DCE_STATUS_MASK_LIST = dmasklist_all3.txt
SIGMALIST_FILE_NAME = sigmalist_all3.txt

DCE_Status_Mask_Fatal_BitPattern = 32544
PMask_Fatal_BitPattern =  18304
RMask_Fatal_BitPattern = 7

 &FIDUCIALIMAGEFRAMEIN
#   Edge_Padding is given in terms of pixels,
   Edge_Padding = 100,
# if specified CROTA2 is used for FIF without modification,
   CROTA2 = A,
 &END

 &MEDFILTER
  Window_X = 21,
  Window_Y = 21,
  N_Outliers_Per_Window = 100,
&END

&DETECT_RADHIT
# Detection_Max_Area (Optional, default is 3),
  Detection_Max_Area      = 3,
# Segmentation_Threshold (Optional, default is 3.),
  Segmentation_Threshold  = 3.,
#  Radhit_Threshold (Optional, default is 6.),
  Radhit_Threshold        = 10.,
&END

 &SNESTIMATORIN
#   Gain = 67.7873,
#   Confusion_Sigma = 146.152,
#   Read_Noise = 8.80000,
 &END

&MOSAICINTIN 
# INTERP_METHOD = 1(default), 2(Drizzle),3(Grid),
   INTERP_METHOD = 2,
   DRIZ_FAC = 1,
#   FINERES = 4,
&END

&MOSAICREINTIN
&END

&DETECT
  Detection_Max_Area         = 100,
  Detection_Min_Area         = 0,
  Detection_Threshold        = 4,
&END

&MOSAICPROJIN
&END

&MOSAICCOVGIN
&END

&MOSAICDUALOUTLIERIN
  MAX_OUTL_IMAGE = 2,
  MAX_OUTL_FRAC = 0.5,
  TILE_XSIZ = 500, 
  TILE_YSIZ = 500, 
&END

&LEVEL
  Threshold_Ratio   = 0.5,
&END

&MOSAICOUTLIERIN
   THRESH_OPTION = 2,
   MIN_PIX_NUM = 3, 
   TILE_XSIZ = 500, 
   TILE_YSIZ = 500, 
&END

&MOSAICRMASKIN
  RM_THRESH = 0.5,
  BOTTOM_THRESHOLD = 3, 
  TOP_THRESHOLD = 3, 
  MIN_COVERAGE = 2,
  MAX_COVERAGE = 100,
  REFINE_OUTLIER = 1, 
  REFINE_OUTLIER_THRESH = 10,
&END


&MOSAICCOADDIN
   TILEMAX_X = 1000, 
   TILEMAX_Y = 1000, 
&END