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Scientific/Technical
Research Expertise and Facilities
at East Tennessee State University
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University-Wide
Facilities
East
Tennessee State University Computational Research Facility
ETSU has developed a high performance
Computational Research Facility built around a group of 60 computers
configured to act as one single large system, or computer cluster. Each
computer has four processor cores giving the cluster the power of 240
typical desktop computers. The ETSU computer cluster allows
applications such as sophisticated modeling, data mining, and large
statistical analyses, we do in research that take several weeks or even
months to complete. Dr. Scott Kirkby, Department of Chemistry is the
director of the Computational Research Facility.
Division of Laboratory Animal Resources
The Division of Laboratory Animal
Resources (DLAR) maintains
an AAALAC accredited laboratory animal facility and program. Two
laboratory animal facilities are supervised by the DLAR staff and
currently provide adequate space for housing and maintaining large (dogs
and pigs) and small animals (guinea pigs, hamsters, mice and rats). All
full-time DLAR technicians are certified by the American Association for
Laboratory Animal Sciences. DLAR staff provide training in handling of
animals, administration of anesthetics, post-surgical maintenance of
animals, bleeding techniques, euthanasia and other standard procedures.
DLAR staff also will assist in restraint of animals, induction and
maintenance of anesthesia, experimental surgery, pre- and postoperative
care, blood and tissue collection and injections. A sterile surgery is
available in the Department of Surgery and must be scheduled through
that department. An x-ray facility is maintained within the DLAR space
and DLAR staff assist in using this instrument.
Expertise, Department
of Biological Sciences
The Department of Biological Sciences
has expertise in cell
and molecular biology (physiology, biochemistry),
ecology,
genetics,
and
quantitative biology and modeling.
Many faculty from the Quillen College
of Medicine have adjunct appointments in the department and collaborate
on research and development projects, thus expanding the departments
intellectual and equipment infrastructure. Further, research in
quantitative biology and modeling is strengthened by collaborations with
the Department of Mathematics through the Institute for Quantitative
Biology. Representative specific areas of expertise include the
following.
Cell and
Molecular
Biology
·
Plant biochemistry and
plant physiology
Ø
Pathogen defense signaling in plants
Ø
Biosynthesis of flavonoids
·
Enzymology
Ø
Molecular modulation of ATP Synthase
· Transcriptional
control of gene expression
· Antibiotic
Reistance and Population Trends in a Bacterial Pathogen
Ecology
·
Community ecology
·
Neuroethology
·
Control of circadian rhythms
· Functional
significance of pollen characters
·
Ethnobotany
·
Plant
ecology
·
Lichenology
Genetics
·
Organelle Population Genetics
· Amino
acid substitutions and hereditary disease
Quantitative Biology
and Modeling
·
Application of graph theory to complex data sets
·
Combinatorics and complex analysis
·
Theoretical biology and modeling
Expertise, Department of Chemistry
The Department of Chemistry faculty
have the expertise and the department has the instrumentation to provide
analytical services to industry in our community. It can manage short
and long term projects. Both inorganic and organic compounds can be
analyzed and characterized by experienced personnel in consultation with
the highly recognized faculty members in the chemistry department at
ETSU. Specific expertise in research of the faculty in the department
includes the following.
·
Synthetic organic
chemistry
Ø
Medicinal chemistry
-
Focus on using organic chemistry to
solve biological problems. Research covers
Ø
Enzymology
Ø
drug discovery
Ø
chemical
biology
Ø
biochemistry
Ø
molecular
biology
Ø
nucleic acids
research
Ø
protein
chemistry and engineering
Ø
signal transduction and regulation.
·
Inorganic chemistry of the
transition metals
Ø Binuclear
mixed-valence complexes of the transition metals
Ø The
role of metal ions in biological systems, the mechanism of iron uptake
and storage by ferritin, and the synthesis and characterization of
copper complexes as models for copper-containing proteins.
· Focus
on luminescence phenomena and their applications in analysis.
· Interestin
monitoring local environmental heavy metals pollution via vegetative
probes and atomic spectroscopy
·
Molecular eecognition
·
Nucleic acids structure
and reactions
· Nuclease
enzyme models metal complexes
·
Catalysis
· Ab
initio quantum chemistry calculations of small molecules
particularly inorganic clusters
·
Raman and infrared
spectroscopy.
· Reactions
of small molecules on microporous surfaces
The following core facilities are
available to the faculty in the Department of Chemistry, as well as
other faculty at ETSU and for fee-for-service and collaborative
research.
The Department
of Chemistry at ETSU offers expertise in all major areas of
chemistry including computational chemistry. It also provides
analytical services to other departments at ETSU as well as to the
industry in our community. The analytical instruments in the department
enable us to analyze a wide range of chemical compounds in different
matrices such as water, gasoline, agricultural crops, etc. The
instruments in the department include Atomic Absorption spectrometer,
FTIR, HPLC, GPC, GC/MS, GC/FID, UV-VIS, and a 400 MHz NMR spectrometer
with multinuclear capabilities. We are able to handle short and
long term projects. The cost of analysis varies with the request. For
long term projects there will be a flat charge depending on the analysis
type. Inorganic Compounds: chloride, fluoride, nitrite/nitrate,
antimony, calcium, potassium, sodium, tin, lead, magnesium, copper,
nickel, manganese, iron, zinc. Organic Compounds: ascorbic acid,
phenol, methyl tert-butyl ether (MTBE), pesticides residue analysis.
Expertise, Department of Computer and Information Sciences
The 21 faculty members of the Department of
Computer and Information Sciences have a broad range of expertise. Many
of the faculty members also have significant experience in industry.
The areas of research expertise that can be drawn upon include the
following categories.
Software
Development and Web Management
-
Software
engineering and development
including risk analysis, project
management , design metrics and testing
-
Web
engineering, programming, design
and
web services
Ø Team-based
Web planning, design, and construction
-
Code refactoring (changes to code
that improves its readability or simplifies its structure without
changing its results)
-
Object Oriented Programming and
Design
-
Database systems and
Database-oriented programming languages
-
Data Management
for Civil Aviation: focus
on finding automated data exchange between Civil Aviation
Authorities in different nations
-
ISO 10303 Part
11 - Express: A project
to build a data definition language geared specifically for the need
of engineering applications. Versions 1 and 2 of this language are
in world wide use
-
Building web-supportive information
handling processes into organizational systems
-
Graph Theory
(includes faculty from
the Department of Mathematics)
-
Algorithm
development
-
Integer
programming
Hardware/Software Systems
-
High
Performance Computing
-
Embedded
system hardware design
-
BIOS theory and
design
-
Device driver
theory and design
-
Control and
automation theory
-
Evaluation of
different embedded processors including processors implementing Java
Byte Code
-
User interface
development for embedded systems
-
Embedded O/S
comparisons and evaluations
-
Distributed
system design including function allocation
Business Applications Including
E-business
-
Requirements
Analysis and Design,
particularly how to get requirements from users in quickly,
accurately, and in a cost-efficient manner.
-
e-Business and e-Commerce:
Ø Usability
and design of commerce and non-commerce business sites
Ø Applicability
of historic physical retail merchandising and design techniques in the
online environment
Ø Effective
e-business models and supporting practices
Ø Usability
and Human Computer Interaction research and statistical analysis
Ø Application
of Software Engineering principles to Web development
-
Use of technology in support of
business
Ø Developing
a technology plan for creating competitive advantage in business Human
Computer Interaction
-
Web Application
Security and internet security
Ethical
and Professional Issues in Computing
-
Internet,
computer law and licensing
-
Codes of ethics
-
Professional
standards
Expertise, Department
of Environmental Health
Research in the Department of
Environmental Health includes factors affecting water quality,
remediation of contaminated soil and ground water, factors affecting the
quality of indoor and outdoor air, factors affecting food safety, human
health risk assessment in the workplace and effects of ergonomics on
health in the work environment. In addition, faculty members in the
Department of Geosciences have over-lapping interests and
expertise. These are listed under that department, but
collaborations are easily accomplished between the departments to better
support research efforts. Specific faculty expertise in the
Department of Environmental Health includes the following.
Evaluation and
remediation of contamination of soil and water
-
Biodegradation of
Creosote Components
-
Factors affecting
embryotoxicity of Atrazine using the FETAX assay
-
Alternative indicators
to identify source of fecal pollution
-
In situ
remediation of
contaminated soil and ground water systems.
-
Chemical oxidation
processes for degradation of organics.
-
Impacts of in situ
remediation on aquifer quality.
-
Development of
TMDLs, implementation plans, and BMPs in 303d listed waters.
-
Monitoring and
evaluation of stream restoration programs.
-
Validating in vitro
models of exposure to corrosive industrial chemicals
-
Identification and
evaluation of contaminants and ambient toxicity in large river
ecosystems.
-
Ecotoxicology of
selenium in wetland and freshwater systems.
-
Utilizing
biomarkers as indicators of changes in community structure and
ecosystem function.
Air Quality
-
Gas-phase
filtration in indoor air quality applications
-
Reactions of ozone
and volatile organic compounds in indoor air
-
Impact of ambient
air pollution on food safety.
Impact
of Ergonomics
-
The epidemiology of work-related
musculoskeletal disorders.
-
Exposure assessment techniques for
highly variable work.
-
Construction ergonomics.
-
Hand-arm and whole-body vibration.
-
Development of
efficient surface EMG analysis techniques for use in epidemiologic
studies of musculoskeletal disorders.
-
Characterization of
mechanical exposure variability in working populations.
-
Development of
portable instrumentation systems for ergonomics field studies.
Human health risk assessment.
-
Community- and labor-oriented
approaches to public health concerns through the prism of public
history.
-
Establishing relationships between
ecosystem health and human health.
-
Historical exposure assessment at
Department of Energy facilities.
-
Ethical, legal, social and policy
implications of biomarkers.
-
Popular education in occupational
and environmental health for workers and health care providers.
This work is supported by the
Environmental Health Sciences Laboratory (EHSL) housed in the Department
of Environmental Health. The EHSL provides routine biological and
chemical water, soil and air analyses for individuals, industries and
local governments. The EHSL is
available to other faculty at ETSU and for fee-for-service and
collaborative research with industry.
Typical projects conducted by the EHSL
include effluent toxicity tests, chemical and biological surveys of
aquatic ecosystems, and indoor biological air surveys. Equipment
available includes; atomic absorption spectrophotometer (Varian Spectra
AA-20) with graphite furnace (GTA-96), two gas chromatographs with flame
ionization and electron capture detectors (Varian 3700 series attached
to the Waters SIM and 820 data capture system and Perkin-Elmer
Autosystem GC), high performance liquid chromatograph (Waters equipped
with a WISP 712 autosampler, model 486 Tunable Absorbance Detector, two
model 501 HPLC pumps, a Waters SIM interfaced to the model 820 Baseline
data capture system), SRI Model 8610 gas chromatograph with purge and
trap and photoionozation and electron capture detectors, liquid
scintillation counter with computerized data capture (Packard Tri-carb
model 1500), two UV-vis Spectrophotometers (Milton Roy, Spectronic
Genesys 5), fluorometer (Turner), one fluorescent microscope (Olympus),
two phase contrast microscopes (Olympus) dissecting scopes, pH meters,
centrifuges of all needed types, oxygen meters, conductivity meters, and
many other instruments necessary for environmental analyses.
Expertise, Department
of Geosciences
Geographic Information Systems
ETSU has a well-equipped GIS facility.
The faculty expertise in GIS is concentrated in the Department of
Geosciences, but also includes faculty in the Geomatics component of
the Department of Technology and Geomatics. Faculty members in
this area have sophisticated knowledge of specific applications of
capturing, storing, analyzing and managing data and associated
attributes which are spatially referenced to the Earth that result in
creation of interactive queries (user created searches), analysis of
spatial information, editing of spatial data such as maps, and
presentation of the results of all these operations.
Generally this
expertise can be used
for scientific investigations, resource management, asset management,
environmental impact assessment, urban planning, cartography, marketing,
and logistics.
Specific areas of current expertise and research include the following.
General
- Integration of
GIS and remote sensing techniques
- Digital image
processing
Urban planning and economic
development
-
Using GIS to predict student
enrollment patterns.
-
Natural hazards and society:
Relationship between hazards and people and development at risk.
-
Remote sensing and
photommetry as tools in surveying
Business
applications
-
Using GIS to investigate firm
location and venture capital investment
-
Remote sensing and
photommetry as tools for choosing business location
Environment
-
Biogeography/landscape ecology monitoring of model environmental
changes
- Land cover
change detection
- Environment
change modeling
- Using GIS to
examine the spread of tree infestation
Geology
Faculty in the division of geology study the Earth, the materials of
which it is made, the structure of those materials, the processes acting
upon them and the organisms which inhabit it. One area of faculty
expertise in the division is in the study of the processes acting upon
the Earth cause hazards such as tsunamis, landslides, and earthquakes,
what land areas are most likely to be affected and how humans can best
prepare to minimize the damage caused by natural disasters.
Additionally, the faculty members have expertise in areas such as
prediction of mineral deposits, stratification of rocks, oil and natural
gas deposits, ground water flow and cave formation. The specific areas
of expertise include the following.
-
Stratigraphy
-
Stratigraphy
-
Mineral and Rock Identification
-
Soil Engineering
-
Identification of natural hazards
and risk associated with them
Ø Hazard
warning systems: Public understanding of, and response to, hazard
warnings
Ø Modeling
preparedness for natural hazards
-
Environmental/consulting geology and
geotechnical engineering
-
Soil, surface water and ground
water assessments
-
Monitoring and remediation solid
waste and low level radioactive waste landfills
-
Review of environmental impact of
commercial industrial complexes
-
Modeling and management
of sinkhole hazards and karst features
-
Development of high
performance computational models to investigate basin scale fluid
flow, heat transfer, mass transport, gold mineralization, and
petroleum generation.
-
Investigation of
groundwater flow, water quality, groundwater contamination, and
surface water and groundwater interaction.
-
Investigation of
Cenozoic climatic and environmental changes using speleothem-based
records in caves.
The research capabilities of faculty in
the Department of Geosciences is supported by the following equipment
resources. GIS software, including ArcGIS (a
complete software system for authoring, serving, and using geographic
information) and ARCView (desktop for mapping and GIS), global
positioning (GPS) software, ground water modeling software (GMS), are
available for use.
Hardware including a
Dell® Precision 380, x64-Bit, Intel
Pentium 4 CPU, 3.00GHz, 2.99 Ghz, 2 GBRAM, a Dell® Optiplex GL520,
x32-Bit, Intel Pentium 4 CPU, 3.00GHz, 2.99 Ghz, 1GB RAM and a Dell®
Latitude D610, x32-Bit, Intel Pentium M CPU, 2.00GHz, 242 MHz, 1GBRAM
support the software. In addition faculty in the department use the
ETSU high performance Computational Research Facility for solving
complex problems.
Equipment supporting GIS and geological
research includes an ASD Spectroradiometer (ASD FieldSpec Pro JR), and
AccuPAR Ceptometer (AccuPAR LP-80). a Nikon Optiphot 2 Petrographic
microscope, field surveying equipment (Brunton and Sylva compasses,
levels, penetrometers); soil sampling equipment, E285 shear-vane tester,
a Shimadzu RF5300 spectrofluorophotometer
which can run water samples with 6 different dyes simultaneously, and an
ISCO automatic water sampler, data loggers, and water testing kits.
There is a fully equipped sedimentology lab with sieves, sieve
shaker, scales, drying ovens, differential velocity settling tubes,
magnetic separator and sediment splitters. Equipment for mineral and
rock identification include Nikon research level Petrographic and
Binocular Microscopes with digital imaging capability, rock and mineral
reference collections, 24” and 10” rock slab saws a petrographic
thin-section trim saw and grinder, a rock crusher and a rock polisher. There is a fully
equipped soil properties lab to support soil engineering studies. This
facility allows measurement of soil density (specific gravity),
consolidation (compaction and soil loading), failure property analysis,
slake durability, direct Shear, the Atterberg limit test (soil
water-content and plasticity) and grain size analysis (sieves and sieve
shaker). The facilities are available to other faculty at ETSU and
for fee-for-service and collaborative research with industry.
The research capabilities of the faculty
within the department are expanded through a partnership with Radford
University which allows use of geophysical equipment such as ground
penetrating radar (GPR), microgravity, and resistivity survey to
investigate bedrock topography and locate subsurface voids and cavities
as well as partnerships with the University of
Minnesota and SUNY at Stony Brook’s isotope labs on age dating (U-Th and
U-Pb) and University of Tennessee and University of Kentucky’s isotope
lab on stable isotope analysis. Additionally, the ETSU Environmental
Health Laboratory provides water quality analysis.
Expertise, Department of Technology and Geomatics
Digital Media
Center
The 11 faculty
members of the Digital Media Center bring art to science and technology
and science and technology to art. Most have significant experience in
the private sector before joining ETSU. They are housed in the Scott M.
Niswonger Digital Media Center.
The areas of research expertise that can be
drawn upon include the following categories.
Digital Imaging
-
Digital video
-
Special effects
-
2D and 3D
animation/visualization
-
Interactive
design
-
Computer
graphics and graphic design
Ø
Graphic design and advertising
-
Computer
illustration and interface design
-
Game design
Direct
Business Applications
-
Multimedia development
-
Desktop publishing
-
e-Business
-
Industrial design
-
Web media, product design
-
Communication design
Engineering Technology
The division of Engineering Technology
consists of Biomedical Engineering Technology, Construction Engineering
Technology, Electrical Engineering Technology, Industrial Technology,
Manufacturing Engineering Technology and Product Development. In
addition to the technical/engineering knowledge in their specific
fields, many of the faculty members have advanced expertise in
manufacturing processes including 6-sigma and lean manufacturing that
take products from concept to market. The program also has the
equipment necessary to support these activities. Specific areas of
expertise include:
·
Product concept
development
· Computer
aided design and drafting (CADD)
·
Product prototyping
·
Material testing
(including construction)
·
Applied materials science
·
Robotics and mechanical
engineering
·
Electrical engineering
· Metrology,
including inspection, performance testing and calibration of equipment
·
Industrial systems design
· Application
of acceptable Industry Standards and ethical judgments to identify,
evaluate and economically solve complex problems.
This work is supported by the
Department of Technology’s communication and instrumentation laboratory.
This lab is set up to support class experiments and local industry.
Some of the equipment used in the lab consist of the following: Fluke
199C(x2) 2.5 Giga-samples/sec color DSO, Avcom 0-6GHz spectrum analyzer,
Ramsey RSG-1000B RF Generator 0-10GHz (variable modulation, 0.1 PPM time
base), Fluke PM6304 RCL meter, Berkley Nucleonics arbitrary waveform
generator (0.1 PPM ref.), Keithly 2701 (x3) high precision (10 µV) data
acquisition system (Ethernet/Webactive) 750 channel capacity, Fluke 744
documenting process calibrator, several Fluke 700 series laboratory
pressure sensor reference standards, RN Electronics comb generator
0-1GHz. Recent equipment added to the lab includes three Fluke 8846A
Precision DMM with a resolution of 1 µV, two Fluke DSP-FOM, Fiber Optic
test sets for use at 1350 and 850 nM, a Stanford Research System SR785
Dynamic Signal Analyzer and an SRS SR650 precision amplifier / filter
have been added as well. The Lab has also added five Benchmark model
OFT Optical Fiber Training Centers. A Marconi Instruments model MI-701
AM/FM Modulation tester has also been added. The lab also contains
instrumentation for combustion analysis, thermal IR signatures and
various other small instrumentation sets for force, vibration, and other
physical parameters. Much of this equipment is portable and can be used
off site to support program activities.
The Department also has a
Dimension printing rapid prototyper
capable of taking 3D computer generated models and turning them into ABS
plastic prototypes. The maximum model size is 8” by 8” by 12” with a
resolution of 0.010 inches. A recent addition along with the Dimension
is a Minolta 3D, model Vivid 9I scanner capable of scanning resolutions
to 5 mm. This scanner will help extend the rapid prototyping and 3D
design / development programs. Several CNC machines are also available
to support product development. As an example the department has an
AXYZ automation CNC table
with a working area of 4’ by 10’ by 10” with an overall accuracy of
0.008 inches. An Instron 50 kNewton tension and compression tester
model 5569 and a Denso six axis robot capable of 2mm resolution have
been added to the department. Siemens has also donated a robotic work
cell with a three axis Analam robot and vision systems. The Denso robot
and the donated work cell are now part of robotics lab being developed
by department faculty. The
facilities are available to other faculty at ETSU and for
fee-for-service and collaborative research with industry.
Expertise, College
of Pharmacy
The Department of Pharmaceutical
Sciences
At the
outset, it is important to note that we are a new College and are still
very much in a developmental stage. Our faculty have been on-site less
than 9 months, with additional faculty positions to be filled in the
next two years. The final composition of the departments has not yet
been determined and as such, the ultimate range of our abilities remains
to be defined.
The
eight current faculty members of the Department of Pharmaceutical
Sciences have research expertise in three major areas: neuroscience,
cancer, and medicinal chemistry and pharmaceutics. Interactions have
been formed with researchers in the Quillen College of Medicine, the
ETSU Cancer Center, the Department of Physical Therapy, the Department
of Biological Sciences and the Department of Psychology. Strong
interdepartmental bridges are also being developed with the clinical
faculty within the College of Pharmacy based on activities centered in
the area of drug and chemical analysis.
Departmental faculty members have expertise in the area of Pharmaceutics
and Pharmacokinetics, and in Analytic Medicinal Chemistry. These areas
address the physical properties of drugs, drug formulations for optimal
effect, drug distribution in biological systems, bioavailability and
bioequivalence, drug stability and host of issues related to isolation
and characterization of known and novel compounds. College of Pharmacy
faculty members possess expertise in pharmacodynamic/pharmacokinetic
modeling and analysis as well as detailed knowledge of drug solubility
and dissolution characteristics. Much of the research is “product
oriented” because so much of the field of pharmacy focuses on the
application and distribution of drug products.
Specific ongoing research projects include the study of cancer
ontogenesis due to malfunctioning signaling, selective transcriptional
control of pituitary growth hormone expression, alteration of
neurotransmitter levels due to environmental, behavioral and dietary
cues, formulation of selective pharmacologic targets, and novel
location-specific delivery methods.
Expertise in the Department includes:
· Drug
analysis and solubility assurance, including HPLC-UV/EC/Diode array,
GC/LC-MS with microsampling
· Physical
pharmacy, drug stability, compatibility and dissolution properties
· Drug
formulation for bioavailability and bioequivalence
· Drug
distribution and metabolism kinetics
· Pharmacodynamic/pharmacokinetic
modeling
· RNA
localization methods including real-time quantitative PCR, in situ
hybridization, RNAase protection and Northern analysis
· Signal
transduction evaluation including cellular distribution of activated and
non-activated transmembrane receptors;
· Neurotransmitter
localization by immunofluorescence and immunocytochemistry;
· Neurotransmitter
detection and quantification by HPLC with electrodectection
·
Neurotransmitter release
via suprafusion
· Use
of Fluoresence resonance energy transfer (FRET) technology for protein
interaction.
·
Site-directed mutagenesis
·
Protein/glycoprotein
expression analysis and quantification
·
Confocal microscopy
· Intracellular
protein localization and translocation
· Medicine
chemistry analysis for dissolution and pharmacokinetics of related
pharmaceuticals, including compounding alternatives;
· Drug
delivery methods employing morphological and locational targeting
employing iontophoresis and phonophoresis.
· Small
animal handling, surgery and drug dosing and kinetics
Quillen College of
Medicine
The following departments comprise the
Quillen College of Medicine (QCOM): Anatomy and Cell Biology;
Biochemistry and Molecular Biology; Microbiology; Pathology;
Pharmacology; Physiology; Family Medicine; Internal Medicine; Obstetrics
and Gynecology; Pediatrics; Psychiatry and Behavioral Sciences and
Surgery. Research expertise ranges from population studies of disease
to molecular biology. Based on experience with past and current
industry partners who have contract with ETSU to work with faculty in
the QCOM, the material presented here will concentrate on areas and
techniques used in physiology, pharmacology, biochemistry and cell and
molecular biology. In modern biomedical research use of these
techniques is not restricted to the traditional departmental lines. In
many ways all biomedical researchers ultimately become cell and
molecular biologists to answer the questions which confront them. Thus,
rather than list expertise by department as has been done with other
units at ETSU, major research focus areas are identified and expertise
within these is listed. The following is not necessarily an exhaustive
list. It is intended to give both areas of interest and some
indication of the techniques and methods available for collaboration,
even if the problem is not precisely within the faculty member’s exact
area of interest. The reader is also referred to the extensive list
of core facilities provided at the end of this section, as the nature of
these facilities may more clearly define the capabilities of the
faculty.
Mechanisms of Athrogenesis
-
Molecular, genetic, cell biological
and biochemical techniques to study mutations in mice that affect
mechanisms and the molecular pathways and mechanisms of the early
events of atherogenesis
-
Molecular mechanisms whereby
C-reactive protein (CRP) induced inflammatory states lead to
atherosclerosis
-
Genes and pathways that contribute
to atherosclerosis using transgenic and knock-out mice having
varying degrees of atherosclerosis propensity concentrating on loci
that influence atherosclerosis.
Ø Investigation
of the HspA12A, a distant member of Hsp70 family, a candidate gene on
one of these loci.
· The
signal transduction pathway of oxysterol induced apoptosis
· Mechanisms
by which fatty acids (particularly C18 fatty acids) regulate the
transcription of the genes involved in cholesterol homeostasis and fatty
acid synthesis
· Elucidation
the molecular pathways and mechanisms
of the cytotoxic (cell death, apoptotic)
effects of oxLDL contribute to the early events of atherogenesis.
· Mechanistic
studies of how fatty acids (particularly C18 fatty acids) regulate the
transcription of the genes involved in cholesterol homeostasis and fatty
acid synthesis
· Investigation
into the abilities of the proteases Chymase and Cathepsin G, both of
which have chymotrypsin-like specificity, to activate matrix
metalloproteinases found in macrophage and atherosclerotic foam cells
Ø
Proteolytic enzymes and
their inhibitors; purification, characterization, sequencing, structure
function relationships, kinetics, and regulation.
Mechanism and Treatment of
Cardiovascular Disease
-
Myocardial Regeneration
-
Fatigue Resistant Muscle for
Cardiac Assistance
-
Methods to Assess the Adequacy of
Cardioplegia
-
Preconditioning of Pig
Cardiomyocytes
-
The role in innate immunity in
myocardial ischemia/reperfusion (I/R) injury (i.e. heart attack) and
congestive heart failure.
Ø Role
of Toll-like receptor (TLR) mediated signaling pathways in myocardial
ischemia/reperfusion injury.
Ø Elucidation
of the immunoregulatory and pro-inflammatory signaling mechanisms
associated with myocardial I/R injury.
Regulation of Cardiac Function
-
Molecular, cellular and
electrophysiological approaches to study of how the cardiac nervous
system modulates electrical and mechanical function of the heart in
normal and pathologic conditions
-
Role of nonclassical transmitters
in cardiac ganglia
-
Study of the intracardiac nervous
system in order to determine the impact that different components of
this system play in cardiac disease.
Ø
Effects of different
inputs to the heart on cardiac rate, conduction velocity, and
contractility are studied
Ø
Focus in on determining
the role of neuropeptides and other novel neurotransmitters within the
heart
-
Development and anatomy of cardiac
neural regulation employing immunohistochemistry for immediate early
genes and neurotransmitter receptor subtypes.
Diabetes
-
Mechanism of risk factors for
obesity and type 2 diabetes.
Ø
Focus on aberrations of
insulin action on glucose uptake into skeletal muscle.
Ø
Follow on demonstration
that two glucose transporter genes are abnormal in the muscle of
subjects with insulin resistance by investigating the mechanism of these
abnormalities by evaluating the structure and function of the human
GLUT3 promoter, developing a GLUT3 knockout mouse line, and seeking out
quantification of gene expression in muscle of the several novel glucose
transporters
Infectious Diseases, Immunology and
Microbiology
Antibiotic Resistance
-
Trends in Resistance to a Topical
Antimicrobial Agent
-
Phenotypic and Genotypic
Characterization of Mupirocin Heteroresistance in Staphylococcus
aureus
-
'Co-pathogenicity' of Moraxella
catarrhalis/S. pneumoniae with Respect to Penicillin Resistance
-
Efficacy of Mupirocin in
Eradication of Nasal Methicillin Resistant Staphylococcus aureus
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Genotypic Characterization of Beta-Lactamase
Gene in Moraxella catarrhalis with Unusual Penicillin Resistance
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Analysis of genetic variation
within bacterial species: genomic DNA purification, PCR,
pulsed-field gel electrophoresis (PFGE), Southern blot
Aerobic bacteriology - species identification, antibiotic resistance
determination by MIC and Kirby-Bauer disk assays
Immune System
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Investigation of the complex
chemistry of glucans and related complex carbohydrates as it relates
to innate immunity
-
Methods include aqueous size
exclusion chromatography with on-line laser light scattering
photometry and differential viscometry, solution FT-NMR and solution
small angle neutron scattering.
-
Focuses are
Ø
the interaction of glucan
ligands with pattern recognition receptors
Ø
the activation of
intracellular signaling pathways following glucan ligand receptor
interaction
Ø
activation of
transcription factors by glucan
Ø
the transcriptional
activation and/or suppression of pro-inflammatory responses.
-
Molecular mechanisms of asthma
Ø
Role of cell-cell
interactions in asthma
Ø Fibroblast-Macrophage
and Fibroblast-Mast Cell interactions leading to signaling of mediator
and cytokine release
·
Role of Mast Cells in
Innate Immunity
Ø Host
defense: Moraxella-induced activation of nuclear factor kappaB and
chemokines induction
Ø
Expression of TOLL-like
Receptors in mast cells and IL-1ß signaling of mast cell cytokine
synthesis
Ø
Biomolecular interaction
analysis of carbohydrate receptors scavenger receptors and innate
immunity
Infectious Diseases
·
HIV Immunoatherogenesis
and molecular basis of vascular injury
Ø
Endothelial / Mast Cell
activation by HIV proteins, tat and gp120
Ø
HIV Co-receptor
expression on Mast Cells and potential role of human mast cells as virus
reservoirs
Ø
Effects of HIV infection
and protease inhibitors on endothelial dysfunction by noninvasive
studies (carotid intimal thickness and brachial artery responsiveness)
· Hepatitis
C / HIV Co-infection on Inflammatory responses in HIV : cytokines and
chemokines expression
· Structural
and functional relationships of the different macromolecules in the
bacterial ribosome
· The
role of hepatitis C core protein in altering TNFR family receptor
signaling pathways
Ø Fas
receptor interactions with core protein and effects on apoptotic
signaling
Ø Molecular
requirements for Fas/HCV core interactions
Ø HCV
core protein sequence variations during HCV infection
·
Soluble Fas levels in
patients co-infected with hepatitis C and human immunodeficiency virus
Ø Correlation
of sFas levels during mono- and co-infection with these two chronic
viruses
· Inflammatory
responses in patients co-infected with hepatitis C and HIV
Ø Role
of co-infection in inducing inflammatory cytokine and chemokine
expression
-
Cellular and molecular biology of
human
Chlamydia trachomatis infections, primarily sexually
transmitted diseases.
Ø In
vitro model system of polarized human endometrial epithelial cells used
to study chlamydial infection.
Ø Investigation
of the role of the female hormones estrogen and progesterone in genital
infections caused by the intracellular bacterial pathogen Chlamydia
trachomatis.
· Mechanisms
of immunity to herpes simplex virus. Investigations have covered several
aspects of immunity and immunopathology to HSV and are directed to
produce more effective vaccines and other control measures for
infection.
Ø Determine
the factors involved in immune induction by HSV and how these impinge on
the magnitude and efficacy of subsequent immunity
Ø Define
the factors that affect the efficacy of B and T cell memory to HSV.
Cancer/Oncology
-
Mechanistic understanding of DNA
damage, repair, and checkpoints, as well as the interactions between
these pathways.
Ø
Voluntary and involuntary
exposure to a variety of ubiquitous genotoxic agents (typically UV
irradiation and environmental carcinogens) which potentially cause DNA
damage, mutations, genome instability and thus cancers.
·
Mast cell infiltration in
esophagitis and esophageal adenocarcinoma: Role of PPAR and angiogenic
cytokines of mast cell origin in carcinogenesis
· Mechanistic
basis for the chemopreventive effects of Tocopherols and Tocotrienols
Green Tea and HMG CO A reductase inhibitors
Ø
Investigation of the
mechanisms that allow tocopherols and tocotrienols to selectively target
cancer cells for cell death and apoptosis.
Ø
Investigation of new
targets of vitamin E action, potencies of new synthetic forms of vitamin
E, and effects of vitamin E forms on preinvasive lesions in rodent
models of prostate and colon cancer.
Neuroscience
·
Developmental control of
retinal growth; regulation of epithelial cell proliferation and cell
size; cell biology of retinal adhesion.
Ø Use
mice genetically engineered to contain mutations in specific genes that
control the cell division cycle and various molecular techniques.
· Functional
anatomy of brainstem taste nuclei and their input into the hypothalamus
using immunohistochemistry for immediate early genes and
neurotransmitter receptor subtypes along with anterograde and retrograde
tract tracing methods.
· Study
of the biological basis of clinical depression and the molecular
mechanisms of antidepressant drugs.
· Exploration
of cellular and molecular mechanisms underlying the modulation of the
key enzymes and transporters in central catecholamine neurons and
protection from neuronal toxicity provided by specific bioactive
compounds. Investigation of the effects of stress hormones,
transcription factors, antidepressants and other psychopharmaco-logical
compounds on gene expression in central catecholamine systems and on
neurogenesis.
· Behavioral
and neurochemical consequences of dopamine D2 supersensitization (D2
receptor priming) [Department of Psychology, College of Arts and
Sciences/Department of Anatomy & Cell Biology, QCOM]
Ø Assays
for brain-derived neurotrophic factor (BDNF), nerve growth factor (NDF),
dopamine (DA), dopac, and receptor numbers.
Ø Behavior
test battery including water maze, activity, elevated plus maze.
Toxicology
The
ETSU Toxicology Laboratory is housed in the Section of
Toxicology in the Department of Pharmacolgy. The ETSU Toxicology
Laboratory maintains the following Licenses and Certifications: Federal
License (HHS-CLIA) # 44D0659142; Tennessee License #2048; Medicare and
Medicaid Provider #44-8087. It also maintains the following Proficiency
Testing Programs: American Association of Bioanalysts; College of
American Pathologists ; Federal Aviation Administration. The Toxicology
Laboratory is equipped to do quantitative and qualitative analyses for a
variety of compounds in blood and other tissues, as well as urine using
gas/liquid chromatography, immunoassay, thin layer chromatography, as
well as fluorescence, color and ultraviolet analysis. It is affiliated
with the Upper East Tennessee Forensic Center and performs toxicology
assays for over 250 autopsy cases each year.
The following core facilities support
the work done by the QCOM faculty and are available for fee-for-service
and collaborative research work.
An ESA
Coulochem III HPLC system is housed in the Department of
Pharmaceutical Sciences College of Pharmacy. The Coulochem III
detector relies upon the electroactive nature of molecules: a molecule's
ability to be oxidized or reduced. Both fluorescence and UV detection
can readily measure many of these compounds, but liquid chromatography
combined with electrochemical detection provide a more-sensitive and
selective alternative. ESA's Coulochem III is the detector of choice.
The Coulocomb system quantifies picogram to femtogram levels of
oxidizable or reducible compounds in a sample and is considered the
industry standard for the analysis of multiple species of
neurotransmitters.
The
Electron Microscopy Core
Facility provides services
related to electron microscopy including in ultrastructural techniques
when needed. The primary premise behind the facility is that
state-of-the-art morphological data are an essential component of modern
research efforts. The facility is located in the Department of
Pathology. Equipment includes: (1) Philips Tecnai 10 transmission
electron microscope (TEM) with computer driven digital image recording
capability and microscope operation; (2) Phil lips 201 TEM; (3) several
current and older models of ultramicrotomes (Ultracut, LKB, etc.); (4)
routine embedding, darkroom, and metal shadowing facilities; (5) Zeiss
DSM 940 scanning electron microscope with X-ray analysis capabilities
(Building 178); (6) several critical point dryers and sputter coaters.
The facility director and a part-time technician provide support in
using the facility.
The Molecular
Biology Core Facility
provides services that include DNA sequencing, high through-put
processing of RNA, Plasmid DNA and PCR clean-up, phophorimaging, and
quantitative PCR. Equipment includes an ABI 377 automated DNA
sequencer, a Beckman Biomek 2000 robotic liquid handler, a BioRad FX
phosphorimaging machine, a BioRad iCycler quantitative PCR machine, a
MacConnell Mini-24 automated plasmid prep machine, an Eppendorf gradient
PCR machine, a MJ research in situ PCR machine, an Eppendorf Spin vac,
an Eppendorf desktop centrifuge (plate spinner), two Eppendorf
microfuges and an Eppenddorf BioPhotometer. Software includes a site
license for Vector NTI and two copies of Quantitation One. Training and
technical assistance is provided by the director and staff.
The Biomolecular Interaction Analysis (BIA)
Facility is house |